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Geocities.com has 82,735 URLs listed in 49,956 Dmoz categories.

The Dark Place
"This is the fanfic your mother warned you about." A variety of het stories, most of them Mulder/Scully, but other pairings include Scully/Krycek and Skinner/Other.
http://www.geocities.com/sheela_xf/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het

TXF Sayanora Support Group FanFics
Mostly Mulder/Scully romance stories, but also includes humor, poems, and stories featuring some other pairings. All stories are reviewed by one of the archivists.
http://www.geocities.com/txfssgfic/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het

Philiater's Web
Skinner/Scully stories. Includes photos, wallpapers, wavs, fan art, and story recommendations.
http://www.geocities.com/philiater1/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het

Paranormal Possibilities
Larilyn's stories featuring Scully, Mulder, Doggett, and Reyes.
http://www.geocities.com/larilyn1013/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het

Hindi Sad Diamond's World
Gen and het stories in a variety of genres. Includes fan art.
http://www.geocities.com/lonegunga1/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het

The Unnamed Dippett Archive
Gen and adult romance stories.
http://www.geocities.com/xfjunkie/doggett.html
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het/Doggett_and_Scully

SHODDS: Slobbering, Howling, Obsessed Dana-Doggett Shippers
Stories and story challenges.
http://www.geocities.com/dogvix/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het/Doggett_and_Scully

By Laura Blaurosen
Scully-centered stories and Mulder/Scully romances. Also includes screen captures and X-Files-themed tarot cards.
http://www.geocities.com/blaurosen/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het/Mulder_and_Scully

Echo Cavern
Gen and adult stories. Includes "Fan Fic 101," a section for fiction many fans regard as classics, some of them now hard to find elsewhere.
http://www.geocities.com/Area51/Station/9582/fanfic.html
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het/Mulder_and_Scully

Ladies of Monday Night Fan Fiction Archive
Gen and adult romances written by Amy Forrester, Pam Gamble, and Slippin' Mickeys, with links to affiliated authors.
http://www.geocities.com/Area51/Crater/3303/
Top/Adult/Arts/Online_Writing/Fiction/Fan_Fiction/Television/X-Files,_The/Het/Mulder_and_Scully